SeqAn3
gapped.hpp
Go to the documentation of this file.
1
// ==========================================================================
2
// SeqAn - The Library for Sequence Analysis
3
// ==========================================================================
4
//
5
// Copyright (c) 2006-2018, Knut Reinert, FU Berlin
6
// Copyright (c) 2016-2018, Knut Reinert & MPI Molekulare Genetik
7
// All rights reserved.
8
//
9
// Redistribution and use in source and binary forms, with or without
10
// modification, are permitted provided that the following conditions are met:
11
//
12
// * Redistributions of source code must retain the above copyright
13
// notice, this list of conditions and the following disclaimer.
14
// * Redistributions in binary form must reproduce the above copyright
15
// notice, this list of conditions and the following disclaimer in the
16
// documentation and/or other materials provided with the distribution.
17
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
18
// its contributors may be used to endorse or promote products derived
19
// from this software without specific prior written permission.
20
//
21
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
24
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
25
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
26
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
27
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
28
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
29
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
30
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
31
// DAMAGE.
32
//
33
// ==========================================================================
34
41
#pragma once
42
43
#include <
seqan3/alphabet/gap/gap.hpp
>
44
#include <
seqan3/alphabet/composition/union_composition.hpp
>
45
46
namespace
seqan3
47
{
48
49
65
template
<
typename
alphabet_t>
67
requires alphabet_concept<alphabet_t>
69
using
gapped
=
union_composition<alphabet_t, gap>
;
70
71
}
// namespace seqan3
union_composition.hpp
Contains seqan3::union_composition.
seqan3
The main SeqAn3 namespace.
Definition:
aligned_sequence_concept.hpp:58
seqan3::union_composition
A combined alphabet that can hold values of either of its alternatives.
Definition:
detail.hpp:194
gap.hpp
Contains seqan3::gap.
seqan3
alphabet
gap
gapped.hpp
Generated by
1.8.13