SeqAn3
phred63.hpp
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34 
40 #pragma once
41 
43 
44 // ------------------------------------------------------------------
45 // phred63
46 // ------------------------------------------------------------------
47 
48 namespace seqan3
49 {
50 
67 class phred63 : public quality_base<phred63, 63>
68 {
69 private:
72 
74  friend base_t;
76  friend base_t::base_t;
78 
79 public:
83  constexpr phred63() : base_t{} {}
84  constexpr phred63(phred63 const &) = default;
85  constexpr phred63(phred63 &&) = default;
86  constexpr phred63 & operator=(phred63 const &) = default;
87  constexpr phred63 & operator=(phred63 &&) = default;
88  ~phred63() = default;
89 
91  constexpr phred63(phred_type const p) : base_t{p} {}
92 
93  // Inherit converting constructor
94  using base_t::base_t;
96 
100  static constexpr phred_type offset_phred{0};
102 
104  static constexpr char_type offset_char{'!'};
106 };
107 
108 } // namespace seqan3
constexpr phred63(phred_type const p)
Construct from phred value.
Definition: phred63.hpp:91
int8_t phred_type
The integer representation of a quality score assignable with =operator.
Definition: quality_base.hpp:62
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:58
Quality type for traditional Sanger and modern Illumina Phred scores (full range).
Definition: phred63.hpp:67
A CRTP-base that refines seqan3::alphabet_base and is used by the quality alphabets.
Definition: quality_base.hpp:55
static constexpr phred_type offset_phred
The projection offset between phred and rank score representation.
Definition: phred63.hpp:101
static constexpr char_type offset_char
The projection offset between char and rank score representation.
Definition: phred63.hpp:104
char_t char_type
The type of the alphabet when converted to char (e.g. via to_char()).
Definition: alphabet_base.hpp:87
Contains seqan3::phred42 quality scores.