SeqAn3
aliases.hpp File Reference

Contains aliases for qualified. More...

#include <iostream>
#include <string>
#include <utility>
#include <seqan3/alphabet/concept.hpp>
#include <seqan3/alphabet/quality/qualified.hpp>
#include <seqan3/alphabet/quality/concept.hpp>
#include <seqan3/alphabet/quality/phred42.hpp>
#include <seqan3/alphabet/nucleotide/all.hpp>
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Namespaces

 seqan3
 The main SeqAn3 namespace.
 

Typedefs

using seqan3::dna15q = qualified< dna15, phred42 >
 An alphabet that stores a seqan3::dna15 letter and an seqan3::qualified letter at each position.
 
using seqan3::dna4q = qualified< dna4, phred42 >
 An alphabet that stores a seqan3::dna4 letter and an seqan3::phred42 letter at each position.
 
using seqan3::dna5q = qualified< dna5, phred42 >
 An alphabet that stores a seqan3::dna5 letter and an seqan3::phred42 letter at each position.
 
using seqan3::rna15q = qualified< rna15, phred42 >
 An alphabet that stores a seqan3::rna15 letter and an seqan3::qualified letter at each position.
 
using seqan3::rna4q = qualified< rna4, phred42 >
 An alphabet that stores a seqan3::rna4 letter and an seqan3::phred42 letter at each position.
 
using seqan3::rna5q = qualified< rna5, phred42 >
 An alphabet that stores a seqan3::rna5 letter and an seqan3::phred42 letter at each position.
 

Detailed Description

Contains aliases for qualified.

Author
Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>