SeqAn3
Structure File

Provides reading and writing of files that contain structured sequences in various formats. More...

Collaboration diagram for Structure File:

Classes

class  seqan3::structure_file_format_vienna
 The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More...
 
class  seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
 A class for reading structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More...
 
struct  seqan3::structure_file_input_default_traits_aa
 A traits type that specifies input as amino acids. More...
 
struct  seqan3::structure_file_input_default_traits_rna
 The default traits for seqan3::structure_file_in. More...
 
interface  seqan3::structure_file_input_format_concept
 The generic concept for structure file in formats. More...
 
struct  seqan3::structure_file_input_options< seq_legal_alphabet, structured_seq_combined >
 The options type defines various option members that influence the behaviour of all or some formats. More...
 
interface  seqan3::structure_file_input_traits_concept
 The requirements a traits_type for seqan3::structure_file_in must meet. More...
 
class  seqan3::structure_file_out< selected_field_ids_, valid_formats_, stream_type_ >
 A class for writing structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More...
 
interface  seqan3::structure_file_output_format_concept
 The generic concept for sequence file out formats. More...
 
struct  seqan3::structure_file_output_options
 The options type defines various option members that influence the behaviour of all or some formats. More...
 

Detailed Description

Provides reading and writing of files that contain structured sequences in various formats.