SeqAn3
all.hpp
Go to the documentation of this file.
1
// ============================================================================
2
// SeqAn - The Library for Sequence Analysis
3
// ============================================================================
4
//
5
// Copyright (c) 2006-2018, Knut Reinert & Freie Universitaet Berlin
6
// Copyright (c) 2016-2018, Knut Reinert & MPI Molekulare Genetik
7
// All rights reserved.
8
//
9
// Redistribution and use in source and binary forms, with or without
10
// modification, are permitted provided that the following conditions are met:
11
//
12
// * Redistributions of source code must retain the above copyright
13
// notice, this list of conditions and the following disclaimer.
14
// * Redistributions in binary form must reproduce the above copyright
15
// notice, this list of conditions and the following disclaimer in the
16
// documentation and/or other materials provided with the distribution.
17
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
18
// its contributors may be used to endorse or promote products derived
19
// from this software without specific prior written permission.
20
//
21
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
22
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
23
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
24
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
25
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
26
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
27
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
28
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
29
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
30
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
31
// DAMAGE.
32
//
33
// ============================================================================
34
40
#pragma once
41
47
#include <
seqan3/io/alignment_file/detail.hpp
>
48
#include <
seqan3/io/alignment_file/format_sam.hpp
>
49
#include <
seqan3/io/alignment_file/header.hpp
>
50
#include <
seqan3/io/alignment_file/input_options.hpp
>
51
#include <
seqan3/io/alignment_file/output.hpp
>
52
#include <
seqan3/io/alignment_file/output_format_concept.hpp
>
53
#include <
seqan3/io/alignment_file/output_options.hpp
>
54
#include <
seqan3/io/alignment_file/sam_tag_dictionary.hpp
>
sam_tag_dictionary.hpp
Provides the seqan3::sam_tag_dictionary class and auxiliaries.
format_sam.hpp
Provides the seqan3::alignment_file_format_sam class.
detail.hpp
Auxiliary functions for the alignment IO.
output_options.hpp
Provides seqan3::alignment_file_output_options.
header.hpp
Provides the seqan3::alignment_file_header class.
input_options.hpp
Provides seqan3::alignment_file_in_options.
output.hpp
Provides seqan3::alignment_file_output and corresponding traits classes.
output_format_concept.hpp
Provides seqan3::alignment_file_output_format_concept and auxiliary classes.
seqan3
io
alignment_file
all.hpp
Generated by
1.8.13