Provides reading and writing of files that contain structured sequences in various formats. More...
Classes | |
class | seqan3::structure_file_format_vienna |
The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More... | |
class | seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ > |
A class for reading structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More... | |
struct | seqan3::structure_file_input_default_traits_aa |
A traits type that specifies input as amino acids. More... | |
struct | seqan3::structure_file_input_default_traits_rna |
The default traits for seqan3::structure_file_in. More... | |
interface | seqan3::structure_file_input_format_concept |
The generic concept for structure file in formats. More... | |
struct | seqan3::structure_file_input_options< seq_legal_alphabet, structured_seq_combined > |
The options type defines various option members that influence the behaviour of all or some formats. More... | |
interface | seqan3::structure_file_input_traits_concept |
The requirements a traits_type for seqan3::structure_file_in must meet. More... | |
class | seqan3::structure_file_out< selected_field_ids_, valid_formats_, stream_type_ > |
A class for writing structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More... | |
interface | seqan3::structure_file_output_format_concept |
The generic concept for sequence file out formats. More... | |
struct | seqan3::structure_file_output_options |
The options type defines various option members that influence the behaviour of all or some formats. More... | |
Provides reading and writing of files that contain structured sequences in various formats.