SeqAn3
Classes
Sequence File
IO
Collaboration diagram for Sequence File:
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Classes
class
seqan3::sequence_file_format_fasta
The FastA format.
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class
seqan3::sequence_file_format_fastq
The FastQ format.
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class
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
A class for reading sequence files, e.g. FASTA, FASTQ ...
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struct
seqan3::sequence_file_input_default_traits_aa
A traits type that specifies input as amino acids.
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struct
seqan3::sequence_file_input_default_traits_dna
The default traits for
seqan3::sequence_file_input
.
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interface
seqan3::sequence_file_input_format_concept
The generic concept for sequence file in formats.
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interface
seqan3::sequence_file_input_traits_concept
The requirements a traits_type for
seqan3::sequence_file_input
must meet.
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class
seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_type_ >
A class for writing sequence files, e.g. FASTA, FASTQ ...
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interface
seqan3::sequence_file_output_format_concept
The generic concept for sequence file out formats.
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Detailed Description
Todo:
document at a later point in time
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