Here is a list of all documented class members with links to the class documentation for each member:
- s -
- sam_require_header
: seqan3::alignment_file_output_options
- scalar_type
: seqan3::simd::simd_traits< simd_t >
, seqan3::simd::simd_traits< builtin_simd_t >
- score()
: seqan3::align_result< output_type_list_t >
, seqan3::gap_scheme< score_t >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::scoring_scheme_concept
- score_type
: seqan3::gap_scheme< score_t >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::scoring_scheme_concept
- scoring_scheme_base()
: seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- sdsl_index_type
: seqan3::fm_index_default_traits
, seqan3::fm_index_traits_concept
- selected_field_ids
: seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_out< selected_field_ids_, valid_formats_, stream_type_ >
- sentinel
: seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::alignment_range< range_buffer_t >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_out< selected_field_ids_, valid_formats_, stream_type_ >
- seq_alphabet()
: seqan3::structure_file_input_traits_concept
- seq_column_type
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- seq_container()
: seqan3::structure_file_input_traits_concept
- seq_container_container()
: seqan3::structure_file_input_traits_concept
- seq_legal_alphabet()
: seqan3::structure_file_input_traits_concept
- seq_type
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- sequence_alphabet()
: seqan3::sequence_file_input_traits_concept
- sequence_alphabet_type
: seqan3::masked< sequence_alphabet_t >
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
- sequence_column_type
: seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- sequence_container()
: seqan3::sequence_file_input_traits_concept
- sequence_container_container()
: seqan3::sequence_file_input_traits_concept
- sequence_file_input()
: seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- sequence_file_output()
: seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_type_ >
- sequence_legal_alphabet()
: seqan3::sequence_file_input_traits_concept
- sequence_quality_column_type
: seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- sequence_quality_type
: seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- sequence_type
: seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- set_affine()
: seqan3::gap_scheme< score_t >
- set_custom_matrix()
: seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- set_hamming_distance()
: seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- set_linear()
: seqan3::gap_scheme< score_t >
- set_similarity_matrix()
: seqan3::aminoacid_scoring_scheme< score_type >
- set_simple_scheme()
: seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
- set_underlying_stream()
: seqan3::debug_stream_type
- setf()
: seqan3::debug_stream_type
- short_copyright
: seqan3::argument_parser_meta_data
- short_description
: seqan3::argument_parser_meta_data
- shrink_to_fit()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
- size()
: seqan3::bi_fm_index< text_t, index_traits_t >
, seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::constexpr_string< N >
, seqan3::fm_index< text_t, fm_index_traits >
- size_type
: seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::bi_fm_index< text_t, index_traits_t >
, seqan3::bi_fm_index_iterator< index_t >
, seqan3::bi_fm_index_iterator_concept
, seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::fm_index< text_t, fm_index_traits >
, seqan3::fm_index_concept
, seqan3::fm_index_iterator< index_t >
, seqan3::fm_index_iterator_concept
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- sorting
: seqan3::alignment_file_header
- store()
: seqan3::bi_fm_index< text_t, index_traits_t >
, seqan3::fm_index< text_t, fm_index_traits >
- stream_type
: seqan3::alignment_file_output< selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
, seqan3::structure_file_out< selected_field_ids_, valid_formats_, stream_type_ >
- string()
: seqan3::constexpr_string< N >
- structure_alphabet()
: seqan3::structure_file_input_traits_concept
- structure_alphabet_type
: seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
- structure_column_type
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- structure_container()
: seqan3::structure_file_input_traits_concept
- structure_container_container()
: seqan3::structure_file_input_traits_concept
- structure_file_in()
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- structure_file_out()
: seqan3::structure_file_out< selected_field_ids_, valid_formats_, stream_type_ >
- structure_type
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- structured_aa()
: seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
- structured_rna()
: seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
- structured_seq_column_type
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- structured_seq_type
: seqan3::structure_file_in< traits_type_, selected_field_ids_, valid_formats_, stream_type_ >
- swap()
: seqan3::bitcompressed_vector< alphabet_type >
, seqan3::concatenated_sequences< inner_type, data_delimiters_type >
, seqan3::constexpr_string< N >
, std::Swappable
- swizzle_type
: seqan3::simd::simd_traits< simd_t >
, seqan3::simd::simd_traits< builtin_simd_t >
- synopsis
: seqan3::argument_parser_meta_data