A traits type that specifies input as amino acids. More...
#include <seqan3/io/structure_file/input.hpp>
Public Types | |
Member types | |
Definitions to satisfy seqan3::structure_file_input_traits_concept. | |
using | seq_alphabet = aa27 |
using | seq_legal_alphabet = aa27 |
using | structure_alphabet = dssp9 |
template<typename _seq_alphabet , typename _structure_alphabet > | |
using | structured_seq_alphabet = structured_aa< _seq_alphabet, _structure_alphabet > |
Member types | |
Definitions to satisfy seqan3::structure_file_input_traits_concept. | |
template<typename _seq_alphabet > | |
using | seq_container = std::vector< _seq_alphabet > |
template<typename _seq_container > | |
using | seq_container_container = concatenated_sequences< _seq_container > |
using | id_alphabet = char |
template<typename _id_alphabet > | |
using | id_container = std::basic_string< _id_alphabet > |
template<typename _id_container > | |
using | id_container_container = concatenated_sequences< _id_container > |
using | bpp_prob = double |
using | bpp_partner = size_t |
template<typename _bpp_prec , typename _bpp_partner > | |
using | bpp_item = std::pair< _bpp_prec, _bpp_partner > |
template<typename _bpp_item > | |
using | bpp_queue = std::set< _bpp_item > |
template<typename _bpp_queue > | |
using | bpp_container = std::vector< _bpp_queue > |
template<typename _bpp_container > | |
using | bpp_container_container = std::vector< _bpp_container > |
template<typename _structure_alphabet > | |
using | structure_container = std::vector< _structure_alphabet > |
template<typename _structure_container > | |
using | structure_container_container = concatenated_sequences< _structure_container > |
template<typename _structured_seq_alphabet > | |
using | structured_seq_container = std::vector< _structured_seq_alphabet > |
template<typename _structured_seq_container > | |
using | structured_seq_container_container = concatenated_sequences< _structured_seq_container > |
using | energy_type = std::optional< double > |
template<typename _energy_type > | |
using | energy_container = std::vector< _energy_type > |
using | react_type = double |
template<typename _react_type > | |
using | react_container = std::vector< _react_type > |
template<typename _react_container > | |
using | react_container_container = std::vector< _react_container > |
using | comment_alphabet = char |
template<typename _comment_alphabet > | |
using | comment_container = std::basic_string< _comment_alphabet > |
template<typename _comment_container > | |
using | comment_container_container = concatenated_sequences< _comment_container > |
using | offset_type = size_t |
template<typename _offset_type > | |
using | offset_container = std::vector< _offset_type > |
A traits type that specifies input as amino acids.