Contains the amino acid alphabets and functionality for translation from nucleotide. More...
Classes | |
class | seqan3::aa20 |
The canonical amino acid alphabet. More... | |
class | seqan3::aa27 |
The twenty-seven letter amino acid alphabet. More... | |
class | seqan3::aminoacid_base< derived_type, size > |
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids. More... | |
interface | seqan3::aminoacid_concept |
A concept that indicates whether an alphabet represents amino acids.In addition to the requirements for seqan3::alphabet_concept, the amino_acid_concept expects conforming alphabets to provide an enum-like interface with all possible 27 amino acids as values (although some may be mapped to others if the alphabet is smaller than 27). More... | |
Contains the amino acid alphabets and functionality for translation from nucleotide.
Amino acid name | Three letter code | One letter code | Remapped in seqan3::aa20 |
---|---|---|---|
Alanine | Ala | A | A |
Arginine | Arg | R | R |
Asparagine | Asn | N | N |
Aspartic acid | Asp | D | D |
Cysteine | Cys | C | C |
Tyrosine | Tyr | Y | Y |
Glutamic acid | Glu | E | E |
Glutamine | Gln | Q | Q |
Glycine | Gly | G | G |
Histidine | His | H | H |
Isoleucine | Ile | I | I |
Leucine | leu | L | L |
Lysine | Lys | K | K |
Methionine | Met | M | M |
Phenylalanine | Phe | F | F |
Proline | Pro | P | P |
Serine | Ser | S | S |
Threonine | Thr | T | T |
Tryptophan | Trp | W | W |
Valine | Val | V | V |
Selenocysteine | Sec | U | C |
Pyrrolysine | Pyl | O | K |
Asparagine or aspartic acid | Asx | B | D |
Glutamine or glutamic acid | Glx | Z | E |
Leucine or Isoleucine | Xle | J | L |
Unknown | Xaa | X | S |
Stop Codon | N/A | * | W |