SeqAn3
format_vienna.hpp File Reference

Provides the seqan3::structure_file_format_vienna class. More...

#include <cstdio>
#include <iterator>
#include <stack>
#include <string>
#include <string_view>
#include <type_traits>
#include <vector>
#include <range/v3/algorithm/copy.hpp>
#include <range/v3/utility/iterator.hpp>
#include <range/v3/view/chunk.hpp>
#include <range/v3/view/drop_while.hpp>
#include <range/v3/view/join.hpp>
#include <range/v3/view/remove_if.hpp>
#include <range/v3/view/transform.hpp>
#include <seqan3/core/metafunction/range.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/stream/parse_condition.hpp>
#include <seqan3/io/structure_file/detail.hpp>
#include <seqan3/io/structure_file/input_options.hpp>
#include <seqan3/io/structure_file/output_options.hpp>
#include <seqan3/range/shortcuts.hpp>
#include <seqan3/range/detail/misc.hpp>
#include <seqan3/range/view/char_to.hpp>
#include <seqan3/range/view/to_char.hpp>
#include <seqan3/range/view/take.hpp>
#include <seqan3/range/view/take_line.hpp>
#include <seqan3/range/view/take_until.hpp>
#include <seqan3/std/ranges>
#include <seqan3/std/view/subrange.hpp>
#include <seqan3/std/view/transform.hpp>
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Classes

class  seqan3::structure_file_format_vienna
 The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More...
 

Namespaces

 seqan3
 The main SeqAn3 namespace.
 

Detailed Description

Provides the seqan3::structure_file_format_vienna class.

Author
Jörg Winkler <j.winkler AT fu-berlin.de>