SeqAn3
concept.hpp File Reference

Quality alphabet concept. More...

#include <iostream>
#include <string>
#include <seqan3/alphabet/concept.hpp>
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Classes

struct  seqan3::underlying_phred< alphabet_type >
 
struct  seqan3::underlying_phred< alphabet_with_member_type >
 The internal phred type. More...
 

Namespaces

 seqan3
 The main SeqAn3 namespace.
 

Helpers for seqan3::quality_concept

These functions and metafunctions expose member variables and types so that the type can model the seqan3::quality_concept.

template<typename alphabet_type >
using seqan3::underlying_phred_t = typename underlying_phred< alphabet_type >::type
 The internal phred type. More...
 
template<typename alphabet_type >
constexpr alphabet_type & seqan3::assign_phred (alphabet_type &chr, char const in)
 The public setter function of a phred score. More...
 
template<typename alphabet_type >
constexpr alphabet_type seqan3::assign_phred (alphabet_type &&chr, char const in)
 
template<typename alphabet_type >
constexpr underlying_phred_t< alphabet_type > seqan3::to_phred (alphabet_type const &chr)
 The public getter function for the phred representation of a score. More...
 

Detailed Description

Quality alphabet concept.

Author
Marie Hoffmann <marie.hoffmann AT fu-berlin.de>