SeqAn3
exception.hpp
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1 // ============================================================================
2 // SeqAn - The Library for Sequence Analysis
3 // ============================================================================
4 //
5 // Copyright (c) 2006-2018, Knut Reinert & Freie Universitaet Berlin
6 // Copyright (c) 2016-2018, Knut Reinert & MPI Molekulare Genetik
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34 
40 #pragma once
41 
42 #include <stdexcept>
43 
44 #include <seqan3/core/platform.hpp>
45 
46 namespace seqan3
47 {
48 
49 // ----------------------------------------------------------------------------
50 // file open exceptions
51 // ----------------------------------------------------------------------------
52 
54 struct unhandled_extension_error : std::invalid_argument
55 {
57  unhandled_extension_error(std::string const & s) : std::invalid_argument{s}
58  {}
59 };
60 
62 struct file_open_error : std::runtime_error
63 {
65  file_open_error(std::string const & s) : std::runtime_error{s}
66  {}
67 };
68 
70 struct parse_error : std::runtime_error
71 {
73  parse_error(std::string const & s) : std::runtime_error{s}
74  {}
75 };
76 
77 // ----------------------------------------------------------------------------
78 // parse exceptions
79 // ----------------------------------------------------------------------------
80 
82 struct unexpected_end_of_input : std::runtime_error
83 {
85  unexpected_end_of_input(std::string const & s) : std::runtime_error{s}
86  {}
87 };
88 
89 // ----------------------------------------------------------------------------
90 // write exceptions
91 // ----------------------------------------------------------------------------
92 
94 struct format_error : std::invalid_argument
95 {
97  format_error(std::string const & s) : std::invalid_argument{s}
98  {}
99 };
100 
101 
102 }
103 
Thrown if there is no format that accepts a given file extension.
Definition: exception.hpp:54
Thrown if I/O was expecting more input (e.g. a delimiter or a new line), but the end of input was rea...
Definition: exception.hpp:82
Contains platform and dependency checks.
Thrown if information given to output format didn&#39;t match expectations.
Definition: exception.hpp:94
parse_error(std::string const &s)
Constructor that forwards the exception string.
Definition: exception.hpp:73
SeqAn specific customisations in the standard namespace.
Definition: align_result.hpp:221
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:58
Thrown if there is an unspecified filesystem or stream error while opening, e.g. permission problem...
Definition: exception.hpp:62
unexpected_end_of_input(std::string const &s)
Constructor that forwards the exception string.
Definition: exception.hpp:85
Thrown if there is a parse error, such as reading an unexpected character from an input stream...
Definition: exception.hpp:70
unhandled_extension_error(std::string const &s)
Constructor that forwards the exception string.
Definition: exception.hpp:57
format_error(std::string const &s)
Constructor that forwards the exception string.
Definition: exception.hpp:97
file_open_error(std::string const &s)
Constructor that forwards the exception string.
Definition: exception.hpp:65