The structure module contains alphabets for RNA and protein structure. More...
Classes | |
class | seqan3::dot_bracket3 |
The three letter RNA structure alphabet of the characters ".()". More... | |
class | seqan3::dssp9 |
The protein structure alphabet of the characters "HGIEBTSCX". More... | |
interface | seqan3::rna_structure_concept |
A concept that indicates whether an alphabet represents RNA structure. More... | |
class | seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t > |
A seqan3::cartesian_composition that joins an aminoacid alphabet with a protein structure alphabet. More... | |
class | seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t > |
A seqan3::cartesian_composition that joins a nucleotide alphabet with an RNA structure alphabet. More... | |
class | seqan3::wuss< SIZE > |
The WUSS structure alphabet of the characters .<>:,-_~;()[]{}AaBbCcDd ... More... | |
The structure module contains alphabets for RNA and protein structure.
The following alphabets are currently supported in SeqAn. Please see the format's page for more details.
Name | Characters | Description |
---|---|---|
Dot Bracket | (). | Simple annotation that defines base pairs. No pseudoknots allowed. |
WUSS | .<>:,-_~;()[]{}AaBb... | Annotation that provides further markups and pseudoknots. |
DSSP | HBEGITSCX | Structure encoding for proteins. |