SeqAn3
translation_genetic_code.hpp
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// ============================================================================
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// SeqAn - The Library for Sequence Analysis
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// ============================================================================
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//
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// Copyright (c) 2006-2018, Knut Reinert & Freie Universitaet Berlin
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// Copyright (c) 2016-2018, Knut Reinert & MPI Molekulare Genetik
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// All rights reserved.
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//
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are met:
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//
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of Knut Reinert or the FU Berlin nor the names of
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// its contributors may be used to endorse or promote products derived
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// from this software without specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
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// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
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// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
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// DAMAGE.
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//
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// ============================================================================
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#pragma once
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#include <
seqan3/core/platform.hpp
>
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namespace
seqan3
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{
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enum struct
genetic_code
: uint8_t
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{
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CANONICAL=1,
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// VERT_MITOCHONDRIAL,
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// YEAST_MITOCHONDRIAL,
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// MOLD_MITOCHONDRIAL,
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// INVERT_MITOCHONDRIAL,
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// CILIATE,
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// FLATWORM_MITOCHONDRIAL = 9,
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// EUPLOTID,
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// PROKARYOTE,
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// ALT_YEAST,
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// ASCIDIAN_MITOCHONDRIAL,
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// ALT_FLATWORM_MITOCHONDRIAL,
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// BLEPHARISMA,
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// CHLOROPHYCEAN_MITOCHONDRIAL,
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// TREMATODE_MITOCHONDRIAL = 21,
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// SCENEDESMUS_MITOCHONDRIAL,
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// THRAUSTOCHYTRIUM_MITOCHONDRIAL,
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// PTEROBRANCHIA_MITOCHONDRIAL,
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// GRACILIBACTERIA
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};
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}
platform.hpp
Contains platform and dependency checks.
seqan3
The main SeqAn3 namespace.
Definition:
aligned_sequence_concept.hpp:58
seqan3::genetic_code
genetic_code
Genetic codes used for translation of nucleotides into amino acids.
Definition:
translation_genetic_code.hpp:52
seqan3
alphabet
aminoacid
translation_genetic_code.hpp
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